IL_8B2L_167
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- ACGUAGCGAAAUGCGAUACUU*AGUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_167 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0765
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|B3|A|47
8B2L|1|B3|C|48
8B2L|1|B3|G|49
8B2L|1|B3|U|50
8B2L|1|B3|A|51
8B2L|1|B3|G|52
8B2L|1|B3|C|53
8B2L|1|B3|G|54
8B2L|1|B3|A|55
8B2L|1|B3|A|56
8B2L|1|B3|A|57
8B2L|1|B3|U|58
8B2L|1|B3|G|59
8B2L|1|B3|C|60
8B2L|1|B3|G|61
8B2L|1|B3|A|62
8B2L|1|B3|U|63
8B2L|1|B3|A|64
8B2L|1|B3|C|65
8B2L|1|B3|U|66
8B2L|1|B3|U|67
*
8B2L|1|B3|A|99
8B2L|1|B3|G|100
8B2L|1|B3|U|101
8B2L|1|B3|C|102
8B2L|1|B3|U|103
Current chains
- Chain B3
- 5.8S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain V3
- Ribosomal protein L37
- Chain X3
- 60S ribosomal protein L39-3
- Chain k3
- 60S ribosomal protein L23a
- Chain n3
- 60S ribosomal protein L35-like
Coloring options: