IL_8B2L_177
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAUG*CCC
- Length
- 7 nucleotides
- Bulged bases
- 8B2L|1|C3|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_177 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.1645
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8B2L|1|C3|G|82
8B2L|1|C3|A|83
8B2L|1|C3|U|84
8B2L|1|C3|G|85
*
8B2L|1|C3|C|92
8B2L|1|C3|C|93
8B2L|1|C3|C|94
Current chains
- Chain C3
- 5S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain I3
- 60S ribosomal protein L18a
- Chain g3
- uL16 (60S ribosomal protein L10)
- Chain q3
- 60S ribosomal protein L7-4-like
Coloring options: