IL_8B2L_187

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAU*A(PSU)UUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_187 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3681

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.5

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

8B2L|1|h1|G|110
8B2L|1|h1|U|111
8B2L|1|h1|U|112
8B2L|1|h1|A|113
8B2L|1|h1|U|114
*
8B2L|1|h1|A|305
8B2L|1|h1|PSU|306
8B2L|1|h1|U|307
8B2L|1|h1|U|308
8B2L|1|h1|C|309

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain P1

40S ribosomal protein S8

Chain X1

40S ribosomal protein S11-like