IL_8B2L_190

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8B2L|1|h1|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_190 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1124

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8B2L|1|h1|G|141
8B2L|1|h1|G|142
8B2L|1|h1|A|143
8B2L|1|h1|U|144
8B2L|1|h1|A|145
8B2L|1|h1|A|146
8B2L|1|h1|C|147
*
8B2L|1|h1|G|163
8B2L|1|h1|C|164
8B2L|1|h1|U|165
8B2L|1|h1|A|166
8B2L|1|h1|A|167
8B2L|1|h1|U|168
8B2L|1|h1|A|169
8B2L|1|h1|C|170

Current chains

Chain h1

18S rRNA

Nearby chains

Chain H1

40S ribosomal protein S24

Chain k1

40S ribosomal protein S6