IL_8B2L_191

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCGU*AG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_191 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.1673

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

8B2L|1|h1|C|147
8B2L|1|h1|C|148
8B2L|1|h1|G|149
8B2L|1|h1|U|150
*
8B2L|1|h1|A|160
8B2L|1|h1|G|161
8B2L|1|h1|A2M|162
8B2L|1|h1|G|163

Current chains

Chain h1

18S rRNA

Nearby chains

Chain H1

40S ribosomal protein S24

Chain k1

40S ribosomal protein S6