IL_8B2L_192

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_192 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.2338

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8B2L|1|h1|C|184
8B2L|1|h1|G|185
8B2L|1|h1|A|186
8B2L|1|h1|C|187
*
8B2L|1|h1|G|193
8B2L|1|h1|A|194
8B2L|1|h1|A|195
8B2L|1|h1|G|196

Current chains

Chain h1

18S rRNA

Nearby chains

Chain P1

40S ribosomal protein S8