IL_8B2L_204

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

8B2L|1|h1|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_204 not in the Motif Atlas

Homologous match to IL_4V88_409

Geometric discrepancy: 0.3539

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8B2L|1|h1|A|485
8B2L|1|h1|U|486
*
8B2L|1|h1|A|508
8B2L|1|h1|A|509
8B2L|1|h1|U|510

Current chains

Chain h1

18S rRNA

Nearby chains

Chain M1

40S ribosomal protein S30