IL_8B2L_206

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUA*UAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_206 not in the Motif Atlas

Geometric match to IL_4V88_411

Geometric discrepancy: 0.1578

The information below is about IL_4V88_411

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.2

Basepair signature

cWW-tHS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8B2L|1|h1|G|519
8B2L|1|h1|U|520
8B2L|1|h1|A|521
*
8B2L|1|h1|U|536
8B2L|1|h1|A|537
8B2L|1|h1|A|538
8B2L|1|h1|C|539

Current chains

Chain h1

18S rRNA

Nearby chains

Chain H1

40S ribosomal protein S24

Chain b1

40S ribosomal protein S9-2-like