IL_8B2L_208
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_208 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1106
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
8B2L|1|h1|A|553
8B2L|1|h1|G|554
8B2L|1|h1|G|555
8B2L|1|h1|G|556
8B2L|1|h1|C|557
8B2L|1|h1|A|558
8B2L|1|h1|A|559
8B2L|1|h1|G|560
*
8B2L|1|h1|C|590
8B2L|1|h1|U|591
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain M1
- 40S ribosomal protein S30
- Chain a1
- 40S ribosomal protein S3-2-like
- Chain b1
- 40S ribosomal protein S9-2-like
- Chain c1
- 40S ribosomal protein S2-3-like
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