IL_8B2L_219

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGG*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_219 not in the Motif Atlas

Homologous match to IL_4V88_427

Geometric discrepancy: 0.2066

The information below is about IL_4V88_427

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8B2L|1|h1|C|825
8B2L|1|h1|G|826
8B2L|1|h1|G|827
*
8B2L|1|h1|U|851
8B2L|1|h1|C|852
8B2L|1|h1|G|853

Current chains

Chain h1

18S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain X1

40S ribosomal protein S11-like