IL_8B2L_226
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AGUCAG*CUUGGAUUU
- Length
- 15 nucleotides
- Bulged bases
- 8B2L|1|h1|G|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_226 not in the Motif Atlas
- Geometric match to IL_4LFB_031
- Geometric discrepancy: 0.2194
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8B2L|1|h1|A|897
8B2L|1|h1|G|898
8B2L|1|h1|U|899
8B2L|1|h1|C|900
8B2L|1|h1|A|901
8B2L|1|h1|G|902
*
8B2L|1|h1|C|913
8B2L|1|h1|U|914
8B2L|1|h1|U|915
8B2L|1|h1|G|916
8B2L|1|h1|G|917
8B2L|1|h1|A|918
8B2L|1|h1|U|919
8B2L|1|h1|U|920
8B2L|1|h1|U|921
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain F1
- 40S ribosomal protein S3a
- Chain S1
- 40S ribosomal protein S14-2
- Chain o3
- uL2 (60S ribosomal protein L8)
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