IL_8B2L_230
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGA*UUUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8B2L|1|h1|U|1099, 8B2L|1|h1|U|1101, 8B2L|1|h1|G|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_230 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1106
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|h1|C|1037
8B2L|1|h1|G|1038
8B2L|1|h1|A|1039
*
8B2L|1|h1|U|1098
8B2L|1|h1|U|1099
8B2L|1|h1|U|1100
8B2L|1|h1|U|1101
8B2L|1|h1|U|1102
8B2L|1|h1|G|1103
8B2L|1|h1|G|1104
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain K1
- 40S ribosomal protein S27
- Chain T1
- 40S ribosomal protein S23
- Chain W1
- 30S ribosomal protein S15, chloroplastic
- Chain X1
- 40S ribosomal protein S11-like
- Chain c1
- 40S ribosomal protein S2-3-like
- Chain e1
- 40S ribosomal protein S15a-1
Coloring options: