IL_8B2L_231

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAU*GCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_231 not in the Motif Atlas

Homologous match to IL_4V88_438

Geometric discrepancy: 0.0942

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8B2L|1|h1|G|1044
8B2L|1|h1|G|1045
8B2L|1|h1|A|1046
8B2L|1|h1|U|1047
*
8B2L|1|h1|G|1077
8B2L|1|h1|C|1078
8B2L|1|h1|A|1079
8B2L|1|h1|C|1080

Current chains

Chain h1

18S rRNA

Nearby chains

Chain F1

40S ribosomal protein S3a

Chain J1

40S ribosomal protein S26

Chain K1

40S ribosomal protein S27

Chain W1

30S ribosomal protein S15, chloroplastic

Chain Z1

40S ribosomal protein SA