IL_8B2L_234

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAGUA(PSU)G*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_234 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1767

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8B2L|1|h1|G|1114
8B2L|1|h1|G|1115
8B2L|1|h1|A|1116
8B2L|1|h1|G|1117
8B2L|1|h1|U|1118
8B2L|1|h1|A|1119
8B2L|1|h1|PSU|1120
8B2L|1|h1|G|1121
*
8B2L|1|h1|U|1132
8B2L|1|h1|G|1133
8B2L|1|h1|A|1134
8B2L|1|h1|A|1135
8B2L|1|h1|A|1136
8B2L|1|h1|C|1137

Current chains

Chain h1

18S rRNA

Nearby chains

Chain T1

40S ribosomal protein S23

Chain p3

60S ribosomal protein L41