IL_8B2L_238
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CC(PSU)G*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_238 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.3132
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.2
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
8B2L|1|h1|C|1176
8B2L|1|h1|C|1177
8B2L|1|h1|PSU|1178
8B2L|1|h1|G|1179
*
8B2L|1|h1|C|1468
8B2L|1|h1|G|1469
8B2L|1|h1|C|1470
8B2L|1|h1|G|1471
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain E1
- 40S ribosomal protein S19-3
- Chain R1
- 40S ribosomal protein S20-2
- Chain U1
- 40S ribosomal protein S18
- Chain W2
- Transfer RNA; tRNA
- Chain Y1
- 40S ribosomal protein S15-like
- Chain f1
- 40S ribosomal protein S16
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