IL_8B2L_249

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

8B2L|1|h1|C|1349, 8B2L|1|h1|U|1350

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_249 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1558

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8B2L|1|h1|A|1348
8B2L|1|h1|C|1349
8B2L|1|h1|U|1350
8B2L|1|h1|A|1351
*
8B2L|1|h1|U|1382
8B2L|1|h1|OMU|1383
8B2L|1|h1|C|1384
8B2L|1|h1|U|1385

Current chains

Chain h1

18S rRNA

Nearby chains

Chain R1

40S ribosomal protein S20-2

Chain f1

40S ribosomal protein S16