IL_8B2L_250

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAU*GGCCA

Length

8 nucleotides

Bulged bases

8B2L|1|h1|C|1377, 8B2L|1|h1|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_250 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.1915

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8B2L|1|h1|U|1354
8B2L|1|h1|A|1355
8B2L|1|h1|U|1356
*
8B2L|1|h1|G|1375
8B2L|1|h1|G|1376
8B2L|1|h1|C|1377
8B2L|1|h1|C|1378
8B2L|1|h1|A|1379

Current chains

Chain h1

18S rRNA

Nearby chains

Chain E1

40S ribosomal protein S19-3

Chain R1

40S ribosomal protein S20-2

Chain f1

40S ribosomal protein S16