IL_8B2L_252
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUA*U(PSU)C
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_252 not in the Motif Atlas
- Geometric match to IL_2O3X_001
- Geometric discrepancy: 0.155
- The information below is about IL_2O3X_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8B2L|1|h1|G|1482
8B2L|1|h1|U|1483
8B2L|1|h1|A|1484
*
8B2L|1|h1|U|1534
8B2L|1|h1|PSU|1535
8B2L|1|h1|C|1536
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain E1
- 40S ribosomal protein S19-3
- Chain I1
- 40S ribosomal protein S25
- Chain U1
- 40S ribosomal protein S18
- Chain d1
- 40S ribosomal protein S5-like
- Chain f1
- 40S ribosomal protein S16
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