IL_8B2L_256

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8B2L|1|h1|C|1643, 8B2L|1|h1|A|1774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_256 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1087

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8B2L|1|h1|C|1642
8B2L|1|h1|C|1643
8B2L|1|h1|G|1644
*
8B2L|1|h1|C|1772
8B2L|1|h1|A|1773
8B2L|1|h1|A|1774
8B2L|1|h1|G|1775

Current chains

Chain h1

18S rRNA

Nearby chains

Chain B1

mRNA

Chain J1

40S ribosomal protein S26

Chain S1

40S ribosomal protein S14-2

Chain W2

Transfer RNA; tRNA