IL_8B2L_261

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_261 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.0835

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8B2L|1|h1|C|1659
8B2L|1|h1|G|1660
8B2L|1|h1|A|1661
8B2L|1|h1|U|1662
*
8B2L|1|h1|A|1752
8B2L|1|h1|G|1753
8B2L|1|h1|A|1754
8B2L|1|h1|G|1755

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain T1

40S ribosomal protein S23

Chain p3

60S ribosomal protein L41