IL_8B2L_264
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGAA*UGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_264 not in the Motif Atlas
- Homologous match to IL_4V88_471
- Geometric discrepancy: 0.1266
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8B2L|1|h1|U|1675
8B2L|1|h1|G|1676
8B2L|1|h1|A|1677
8B2L|1|h1|A|1678
*
8B2L|1|h1|U|1737
8B2L|1|h1|G|1738
8B2L|1|h1|A|1739
8B2L|1|h1|A|1740
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain L3
- 60S ribosomal protein L24-like
- Chain P1
- 40S ribosomal protein S8
- Chain e3
- 60S ribosomal protein L23
- Chain k1
- 40S ribosomal protein S6
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