IL_8B2L_265

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_265 not in the Motif Atlas

Geometric match to IL_5TBW_128

Geometric discrepancy: 0.1699

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8B2L|1|h1|G|1681
8B2L|1|h1|U|1682
8B2L|1|h1|U|1683
8B2L|1|h1|C|1684
*
8B2L|1|h1|G|1731
8B2L|1|h1|U|1732
8B2L|1|h1|C|1733
8B2L|1|h1|C|1734

Current chains

Chain h1

18S rRNA

Nearby chains

Chain L3

60S ribosomal protein L24-like

Chain P1

40S ribosomal protein S8

Chain k1

40S ribosomal protein S6