IL_8B2L_266

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_266 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1837

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8B2L|1|h1|C|1684
8B2L|1|h1|G|1685
8B2L|1|h1|G|1686
8B2L|1|h1|A|1687
8B2L|1|h1|U|1688
*
8B2L|1|h1|A|1727
8B2L|1|h1|G|1728
8B2L|1|h1|A|1729
8B2L|1|h1|A|1730
8B2L|1|h1|G|1731

Current chains

Chain h1

18S rRNA

Nearby chains

Chain L3

60S ribosomal protein L24-like

Chain P1

40S ribosomal protein S8

Chain k1

40S ribosomal protein S6