IL_8B2L_272
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGU(A2M)GC
- Length
- 13 nucleotides
- Bulged bases
- 8B2L|1|A3|A|943, 8B2L|1|A3|G|947
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_272 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0608
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8B2L|1|A3|OMG|815
8B2L|1|A3|A|816
8B2L|1|A3|A2M|817
8B2L|1|A3|A|818
8B2L|1|A3|G|819
*
8B2L|1|A3|C|941
8B2L|1|A3|U|942
8B2L|1|A3|A|943
8B2L|1|A3|G|944
8B2L|1|A3|U|945
8B2L|1|A3|A2M|946
8B2L|1|A3|G|947
8B2L|1|A3|C|948
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain D3
- 60S ribosomal protein L13
- Chain F3
- Ribosomal protein L15
- Chain V3
- Ribosomal protein L37
- Chain f3
- uL15 (60S ribosomal protein L27a)
- Chain s3
- uL4 (60S ribosomal protein L4)
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