IL_8B2L_276
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCCAA(PSU)*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8B2L|1|A3|C|1013
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_276 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.3541
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8B2L|1|A3|G|1011
8B2L|1|A3|C|1012
8B2L|1|A3|C|1013
8B2L|1|A3|A|1014
8B2L|1|A3|A|1015
8B2L|1|A3|PSU|1016
*
8B2L|1|A3|A|1058
8B2L|1|A3|A|1059
8B2L|1|A3|A|1060
8B2L|1|A3|C|1061
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain g3
- uL16 (60S ribosomal protein L10)
- Chain h3
- 60S ribosomal protein L5-like
Coloring options: