IL_8B2L_277
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUUA*UUC(PSU)
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_277 not in the Motif Atlas
- Homologous match to IL_8C3A_481
- Geometric discrepancy: 0.3021
- The information below is about IL_8C3A_481
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
8B2L|1|A3|A|1018
8B2L|1|A3|U|1019
8B2L|1|A3|U|1020
8B2L|1|A3|A|1021
*
8B2L|1|A3|U|1053
8B2L|1|A3|U|1054
8B2L|1|A3|C|1055
8B2L|1|A3|PSU|1056
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain g3
- uL16 (60S ribosomal protein L10)
- Chain h3
- 60S ribosomal protein L5-like
- Chain i2
- Transfer RNA; tRNA
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