IL_8B2L_278

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AU(PSU)*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_278 not in the Motif Atlas

Homologous match to IL_8P9A_274

Geometric discrepancy: 0.3401

The information below is about IL_8P9A_274

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8B2L|1|A3|A|1131
8B2L|1|A3|U|1132
8B2L|1|A3|PSU|1133
*
8B2L|1|A3|A|1147
8B2L|1|A3|C|1148
8B2L|1|A3|U|1149

Current chains

Chain A3

25S rRNA

Nearby chains

Chain C3

5S ribosomal RNA; 5S rRNA

Chain O3

60S ribosomal protein L29

Chain q3

60S ribosomal protein L7-4-like