IL_8B2L_282

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

8B2L|1|A3|G|2338

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_282 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0551

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

8B2L|1|A3|G|1904
8B2L|1|A3|G|1905
8B2L|1|A3|A|1906
8B2L|1|A3|A|1907
8B2L|1|A3|G|1908
8B2L|1|A3|U|1909
8B2L|1|A3|C|1910
8B2L|1|A3|G|1911
8B2L|1|A3|G|1912
*
8B2L|1|A3|C|2336
8B2L|1|A3|U|2337
8B2L|1|A3|G|2338
8B2L|1|A3|U|2339
8B2L|1|A3|OMC|2340

Current chains

Chain A3

25S rRNA

Nearby chains

Chain e3

60S ribosomal protein L23

Chain r3

uL3 (60S ribosomal protein L3)