IL_8B2L_284

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

8B2L|1|A3|A2M|2284, 8B2L|1|A3|C|2290, 8B2L|1|A3|C|2309

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_284 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1064

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8B2L|1|A3|C|2280
8B2L|1|A3|5MC|2281
8B2L|1|A3|A|2282
8B2L|1|A3|A|2283
8B2L|1|A3|A2M|2284
8B2L|1|A3|U|2285
8B2L|1|A3|G|2286
8B2L|1|A3|C|2287
8B2L|1|A3|C|2288
8B2L|1|A3|U|2289
8B2L|1|A3|C|2290
8B2L|1|A3|OMG|2291
*
8B2L|1|A3|C|2307
8B2L|1|A3|G|2308
8B2L|1|A3|C|2309
8B2L|1|A3|G|2310

Current chains

Chain A3

25S rRNA

Nearby chains

Chain h1

Small subunit ribosomal RNA; SSU rRNA

Chain o3

uL2 (60S ribosomal protein L8)

Chain p3

60S ribosomal protein L41