IL_8B2L_289

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGC(PSU)*GA(PSU)CC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_289 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.3603

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8B2L|1|A3|G|2826
8B2L|1|A3|G|2827
8B2L|1|A3|C|2828
8B2L|1|A3|PSU|2829
*
8B2L|1|A3|G|2866
8B2L|1|A3|A|2867
8B2L|1|A3|PSU|2868
8B2L|1|A3|C|2869
8B2L|1|A3|C|2870

Current chains

Chain A3

25S rRNA

Nearby chains

Chain O3

60S ribosomal protein L29

Chain g3

uL16 (60S ribosomal protein L10)

Chain r3

uL3 (60S ribosomal protein L3)