IL_8B2L_291

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

8B2L|1|A3|G|2948, 8B2L|1|A3|A2M|2949

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_291 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.3788

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8B2L|1|A3|OMC|2882
8B2L|1|A3|PSU|2883
8B2L|1|A3|C|2884
*
8B2L|1|A3|G|2946
8B2L|1|A3|PSU|2947
8B2L|1|A3|G|2948
8B2L|1|A3|A2M|2949
8B2L|1|A3|G|2950

Current chains

Chain A3

25S rRNA

Nearby chains

Chain e3

60S ribosomal protein L23

Chain r3

uL3 (60S ribosomal protein L3)