IL_8B2L_293
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- U(OMC)AAA*(PSU)GA(OMC)AA
- Length
- 11 nucleotides
- Bulged bases
- 8B2L|1|h1|A|472
- QA status
- Modified nucleotides: OMC, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_293 not in the Motif Atlas
- Homologous match to IL_8C3A_394
- Geometric discrepancy: 0.2368
- The information below is about IL_8C3A_394
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_30569.1
- Basepair signature
- cWW-cWW-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|h1|U|37
8B2L|1|h1|OMC|38
8B2L|1|h1|A|39
8B2L|1|h1|A|40
8B2L|1|h1|A|41
*
8B2L|1|h1|PSU|470
8B2L|1|h1|G|471
8B2L|1|h1|A|472
8B2L|1|h1|OMC|473
8B2L|1|h1|A|474
8B2L|1|h1|A|475
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A1
- 40S ribosomal protein S4
- Chain H1
- 40S ribosomal protein S24
- Chain b1
- 40S ribosomal protein S9-2-like
Coloring options: