IL_8B2L_295

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUA*(PSU)UUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_295 not in the Motif Atlas

Homologous match to IL_8C3A_399

Geometric discrepancy: 0.2652

The information below is about IL_8C3A_399

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8B2L|1|h1|G|110
8B2L|1|h1|U|111
8B2L|1|h1|U|112
8B2L|1|h1|A|113
*
8B2L|1|h1|PSU|306
8B2L|1|h1|U|307
8B2L|1|h1|U|308
8B2L|1|h1|C|309

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain P1

40S ribosomal protein S8

Chain X1

40S ribosomal protein S11-like