IL_8B2L_302

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AC*GGA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_302 not in the Motif Atlas

Homologous match to IL_8C3A_430

Geometric discrepancy: 0.3317

The information below is about IL_8C3A_430

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8B2L|1|h1|A|750
8B2L|1|h1|C|751
*
8B2L|1|h1|G|806
8B2L|1|h1|G|807
8B2L|1|h1|A|808
8B2L|1|h1|PSU|809

Current chains

Chain h1

18S rRNA

Nearby chains

Chain O1

40S ribosomal protein S7

Chain T1

40S ribosomal protein S23

Chain X1

40S ribosomal protein S11-like

Chain e1

40S ribosomal protein S15a-1