IL_8B2L_305

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

8B2L|1|h1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_305 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1252

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8B2L|1|h1|G|898
8B2L|1|h1|U|899
8B2L|1|h1|C|900
8B2L|1|h1|A|901
8B2L|1|h1|G|902
*
8B2L|1|h1|C|913
8B2L|1|h1|U|914
8B2L|1|h1|U|915
8B2L|1|h1|G|916
8B2L|1|h1|G|917
8B2L|1|h1|A|918
8B2L|1|h1|U|919
8B2L|1|h1|U|920

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain F1

40S ribosomal protein S3a

Chain S1

40S ribosomal protein S14-2