IL_8B2L_309

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

8B2L|1|h1|OMU|1272

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_309 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.093

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8B2L|1|h1|G|1271
8B2L|1|h1|OMU|1272
8B2L|1|h1|G|1273
*
8B2L|1|h1|C|1445
8B2L|1|h1|C|1446

Current chains

Chain h1

18S rRNA

Nearby chains

Chain R1

40S ribosomal protein S20-2

Chain V1

40S ribosomal protein S29

Chain l1

40S ribosomal protein S10-1-like