IL_8B2L_313

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAUG*CGGCCA

Length

10 nucleotides

Bulged bases

8B2L|1|h1|C|1377, 8B2L|1|h1|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_313 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.3159

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8B2L|1|h1|U|1354
8B2L|1|h1|A|1355
8B2L|1|h1|U|1356
8B2L|1|h1|G|1357
*
8B2L|1|h1|C|1374
8B2L|1|h1|G|1375
8B2L|1|h1|G|1376
8B2L|1|h1|C|1377
8B2L|1|h1|C|1378
8B2L|1|h1|A|1379

Current chains

Chain h1

18S rRNA

Nearby chains

Chain E1

40S ribosomal protein S19-3

Chain R1

40S ribosomal protein S20-2

Chain f1

40S ribosomal protein S16