IL_8B5L_007

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

8B5L|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_007 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2455

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

8B5L|1|5|C|118
8B5L|1|5|G|119
8B5L|1|5|A|120
8B5L|1|5|A|121
*
8B5L|1|5|U|152
8B5L|1|5|G|153

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15

Chain h

60S ribosomal protein L35