IL_8B5L_026

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8B5L|1|5|C|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_026 not in the Motif Atlas

Homologous match to IL_8GLP_027

Geometric discrepancy: 0.3892

The information below is about IL_8GLP_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

8B5L|1|5|G|498
8B5L|1|5|C|499
8B5L|1|5|G|500
*
8B5L|1|5|C|650
8B5L|1|5|C|651

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4