IL_8B5L_027

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUCUCG*CC

Length

8 nucleotides

Bulged bases

8B5L|1|5|C|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_027 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.19

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8B5L|1|5|G|501
8B5L|1|5|U|502
8B5L|1|5|C|503
8B5L|1|5|U|504
8B5L|1|5|C|505
8B5L|1|5|G|506
*
8B5L|1|5|C|648
8B5L|1|5|C|649

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4