IL_8B5L_046
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GGAUC*GCGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_046 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.2978
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B5L|1|5|G|1380
8B5L|1|5|G|1381
8B5L|1|5|A|1382
8B5L|1|5|U|1383
8B5L|1|5|C|1384
*
8B5L|1|5|G|1410
8B5L|1|5|C|1411
8B5L|1|5|G|1412
8B5L|1|5|C|1413
8B5L|1|5|A|1414
8B5L|1|5|C|1415
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Q
- Ribosomal protein L18
- Chain b
- 60S ribosomal protein L29
Coloring options: