IL_8B5L_081
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 8B5L|1|5|G|2186
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_081 not in the Motif Atlas
- Homologous match to IL_8C3A_061
- Geometric discrepancy: 0.0858
- The information below is about IL_8C3A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8B5L|1|5|C|2133
8B5L|1|5|G|2134
8B5L|1|5|C|2135
*
8B5L|1|5|G|2185
8B5L|1|5|G|2186
8B5L|1|5|U|2187
8B5L|1|5|G|2188
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain a
- 60S ribosomal protein L27a
- Chain e
- Ribosomal protein L32
- Chain r
- 60S ribosomal protein L28
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