IL_8B5L_102

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8B5L|1|5|G|3571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_102 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.0904

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8B5L|1|5|A|2693
8B5L|1|5|G|2694
8B5L|1|5|U|2695
8B5L|1|5|C|2696
8B5L|1|5|G|2697
8B5L|1|5|G|2698
*
8B5L|1|5|C|3569
8B5L|1|5|U|3570
8B5L|1|5|G|3571
8B5L|1|5|U|3572

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain V

60S ribosomal protein L23