IL_8B5L_148
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UGUA(PSU)(OMG)U*GCGAAG
- Length
- 13 nucleotides
- Bulged bases
- 8B5L|1|5|U|4380
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_148 not in the Motif Atlas
- Geometric match to IL_3GS8_001
- Geometric discrepancy: 0.3973
- The information below is about IL_3GS8_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80926.1
- Basepair signature
- cWW-cWW-tSH-tHS-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8B5L|1|5|U|4378
8B5L|1|5|G|4379
8B5L|1|5|U|4380
8B5L|1|5|A|4381
8B5L|1|5|PSU|4382
8B5L|1|5|OMG|4383
8B5L|1|5|U|4384
*
8B5L|1|5|G|4407
8B5L|1|5|C|4408
8B5L|1|5|G|4409
8B5L|1|5|A|4410
8B5L|1|5|A|4411
8B5L|1|5|G|4412
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain W
- Ribosomal protein L24
- Chain d
- 60S ribosomal protein L31
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