IL_8B5L_151
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GAUUAU*AGAAUC
- Length
- 12 nucleotides
- Bulged bases
- 8B5L|1|5|A|4454
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_151 not in the Motif Atlas
- Geometric match to IL_5J7L_350
- Geometric discrepancy: 0.2323
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8B5L|1|5|G|4426
8B5L|1|5|A|4427
8B5L|1|5|U|4428
8B5L|1|5|U|4429
8B5L|1|5|A|4430
8B5L|1|5|U|4431
*
8B5L|1|5|A|4451
8B5L|1|5|G|4452
8B5L|1|5|A|4453
8B5L|1|5|A|4454
8B5L|1|5|U|4455
8B5L|1|5|C|4456
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain O
- 60S ribosomal protein L13a
- Chain m
- Ubiquitin-60S ribosomal protein L40
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