IL_8B5L_181
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CGGUAA*UAAAU(E7G)
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: E7G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_181 not in the Motif Atlas
- Homologous match to IL_8GLP_291
- Geometric discrepancy: 0.1828
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B5L|1|5|C|1671
8B5L|1|5|G|1672
8B5L|1|5|G|1673
8B5L|1|5|U|1674
8B5L|1|5|A|1675
8B5L|1|5|A|1676
*
8B5L|1|5|U|1731
8B5L|1|5|A|1732
8B5L|1|5|A|1733
8B5L|1|5|A|1734
8B5L|1|5|U|1735
8B5L|1|5|E7G|1736
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain F
- 60S ribosomal protein L7
- Chain I
- Ribosomal protein L10
- Chain S
- 60S ribosomal protein L18a
- Chain T
- 60S ribosomal protein L21
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