IL_8B5L_184
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UUAA(P7G)*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 8B5L|1|5|U|2009
- QA status
- Modified nucleotides: P7G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_184 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.1048
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8B5L|1|5|U|1844
8B5L|1|5|U|1845
8B5L|1|5|A|1846
8B5L|1|5|A|1847
8B5L|1|5|P7G|1848
*
8B5L|1|5|C|2006
8B5L|1|5|C|2007
8B5L|1|5|A|2008
8B5L|1|5|U|2009
8B5L|1|5|A|2010
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L7
- Chain Q
- Ribosomal protein L18
- Chain e
- Ribosomal protein L32
- Chain f
- 60S ribosomal protein L35a
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