IL_8B5L_193
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_193 not in the Motif Atlas
- Homologous match to IL_8GLP_315
- Geometric discrepancy: 0.056
- The information below is about IL_8GLP_315
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56912.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B5L|1|5|C|4212
8B5L|1|5|A|4213
8B5L|1|5|U|4214
8B5L|1|5|U|4215
8B5L|1|5|G|4216
*
8B5L|1|5|C|4231
8B5L|1|5|C|4232
8B5L|1|5|A|4233
8B5L|1|5|A|4234
8B5L|1|5|G|4235
8B5L|1|5|C|4236
8B5L|1|5|G|4237
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain H
- 60S ribosomal protein L9
- Chain O
- 60S ribosomal protein L13a
- Chain V
- 60S ribosomal protein L23
- Chain m
- Ubiquitin-60S ribosomal protein L40
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