IL_8B6C_035
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 8B6C|1|5|G|743, 8B6C|1|5|C|813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B6C_035 not in the Motif Atlas
- Geometric match to IL_5TBW_020
- Geometric discrepancy: 0.2177
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B6C|1|5|G|740
8B6C|1|5|A|741
8B6C|1|5|A|742
8B6C|1|5|G|743
8B6C|1|5|G|744
8B6C|1|5|U|745
8B6C|1|5|G|746
8B6C|1|5|G|747
*
8B6C|1|5|U|808
8B6C|1|5|G|809
8B6C|1|5|U|810
8B6C|1|5|U|811
8B6C|1|5|A|812
8B6C|1|5|C|813
8B6C|1|5|A|814
8B6C|1|5|G|815
8B6C|1|5|C|816
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain M
- 60S ribosomal protein L14
- Chain S
- 60S ribosomal protein L18a
Coloring options: