IL_8B6C_060
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- CCGGUAA*UAAAU(E7G)G
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: E7G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B6C_060 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.1631
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8B6C|1|5|C|1670
8B6C|1|5|C|1671
8B6C|1|5|G|1672
8B6C|1|5|G|1673
8B6C|1|5|U|1674
8B6C|1|5|A|1675
8B6C|1|5|A|1676
*
8B6C|1|5|U|1731
8B6C|1|5|A|1732
8B6C|1|5|A|1733
8B6C|1|5|A|1734
8B6C|1|5|U|1735
8B6C|1|5|E7G|1736
8B6C|1|5|G|1737
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain F
- 60S ribosomal protein L7
- Chain I
- Ribosomal protein L10
- Chain S
- 60S ribosomal protein L18a
- Chain T
- 60S ribosomal protein L21
Coloring options: